Table 3.

Global comparisons of HU6800, HG-U95A, HG-U133A, consensus mRNA, and RPLA protein data sets

cDNAHU6800HG-U95AHG-U133AConsensus
(A) rc for cells
    HU68000.48
    HG-U95A0.540.81
    HG-U133A0.540.820.82
    Consensus0.540.700.700.83
    Protein0.480.580.510.580.63
(B) rc for genes
    HU68000.38
    HG-U95A0.350.390.61
    Consensus0.520.550.70.86
    Protein0.200.240.240.310.34
(C) P
    HU68000.30
    HG-U95A0.770.45
    HG-U133A1.000.230.72
    Consensus0.550.0270.0740.45
    Protein0.00550.000410.00190.00980.027
  • NOTE: A, Pearson correlation of correlation coefficients (rc) for cells (over genes) calculated for all 15 possible pairs of the six data sets. B, Pearson values for genes (over cells) for all 15 possible pairs of the six data sets. C, two-tailed McNemar P values for all 15 possible pairs of data sets in the PAM shrunken centroid functional class prediction. As explained in the text, the prostate lines were omitted because there were only two of them.