Overview of the transcript and protein data sets
| Data set | Description | No. feature sets or clones (genes) | Reference | |||
|---|---|---|---|---|---|---|
| mRNA expression | ||||||
| cDNA microarray | Pin-spotted cDNA array | 9,706 Clones (7,190 genes) | (15, 16) | |||
| Affymetrix HU6800 | In situ synthesized oligonucleotide array | 6,800 Feature sets (5,562 genes) | (20, 21) | |||
| Affymetrix HG-U95A | In situ synthesized oligonucleotide array (5 chips) | ∼12,000 Feature sets (8,978 genes) | This publication | |||
| Affymetrix HG-U133A | In situ synthesized oligonucleotide array (2 chips) | ∼22,000 Feature sets (13,032 genes) | This publication | |||
| mRNA consensus set | Consensus of the four individual platforms (see Materials and Methods) | See Materials and Methods (75 genes) | This publication | |||
| Protein expression | ||||||
| RPLA | 640 Cell lysate spots in 10 dilutions (2-fold) for each of the 60 cell lines plus controls consisting of a pool of all 60 | 162 Antibodies (94 proteins) | This publication for much of the data(4) | |||