Table 2.

Top 50 positive and negative array CGH expression correlations statistically significant (two-tailed 95% bootstrap) for both cDNA and oligonucleotide expression array comparisons

Array CGH geneExpression level geneR* (cDNA array)Lower 95% CI bound (cDNA array)Upper 95% CI bound (cDNA array)R (Oligo array)Lower 95% CI bound (oligo array)Upper 95% CI bound (oligo array)
CCND1EMS10.580.320.750.450.130.67
TFRCPDGFRA0.510.210.810.520.280.75
LYNRAB20.570.380.710.450.230.62
PSME1APEX0.620.450.760.390.130.62
CTSCMRE11A0.540.340.700.460.170.67
EMS1CCND10.480.210.670.510.290.68
RAB2FKBP1A0.560.360.730.410.230.58
FGFR3CCNA20.480.290.670.460.270.64
VHLRAF10.560.400.710.350.080.59
CDC25BPML0.610.120.850.280.050.48
ATF4FKBP1A0.490.220.710.410.130.63
PTPN1CSE1L0.480.180.740.390.060.65
MYBL2CSE1L0.480.190.740.390.070.64
DOC1DDR20.430.140.650.410.180.60
AKT1APEX0.530.300.700.300.060.51
AGTR1ACVR10.480.210.680.350.050.59
PRKCBP1CDH10.420.100.620.410.020.63
MX2FKBP1A0.360.100.580.470.230.67
PDGFRACCNA20.470.260.630.360.160.51
RAF1VHL0.460.220.630.350.090.56
PRKCIDOC10.520.250.710.280.050.48
BCL6TFRC0.310.010.570.480.350.61
ERBB2TOP2A0.440.220.610.340.050.55
PLS1RAB20.430.210.600.340.140.54
CDC25ACCNA20.420.200.600.350.100.57
BMIFYN−0.32−0.54−0.07−0.40−0.56−0.22
BMIDDR2−0.46−0.64−0.25−0.27−0.45−0.07
MRE11ACSF1−0.35−0.59−0.06−0.39−0.59−0.15
CDH1FYN−0.31−0.55−0.05−0.42−0.63−0.17
MEN1RAB2−0.41−0.60−0.12−0.33−0.54−0.19
EMS1PDGFRA−0.50−0.71−0.19−0.24−0.38−0.07
CCNA2ACVR1−0.44−0.62−0.22−0.30−0.52−0.07
MYBL2LYN−0.45−0.66−0.12−0.29−0.49−0.06
CSE1LLYN−0.41−0.62−0.12−0.33−0.52−0.08
ALDH2ACVR1−0.39−0.59−0.19−0.36−0.55−0.15
PTPN1LYN−0.46−0.67−0.14−0.29−0.48−0.05
PIM1CTSC−0.32−0.51−0.09−0.44−0.61−0.24
ALDH2RAB2−0.40−0.62−0.12−0.36−0.54−0.20
SASFYN−0.36−0.62−0.04−0.41−0.63−0.15
CCNA2DDR2−0.43−0.63−0.18−0.36−0.53−0.16
CDKN1ACTSC−0.34−0.50−0.15−0.46−0.60−0.28
CSF1CDH1−0.43−0.65−0.13−0.38−0.61−0.10
ACVR1RAF1−0.34−0.61−0.04−0.48−0.65−0.28
CCND1PDGFRA−0.57−0.77−0.27−0.27−0.42−0.10
SASDDR2−0.53−0.73−0.25−0.33−0.53−0.11
CDH1DDR2−0.47−0.68−0.25−0.42−0.61−0.22
ARHAERBB2−0.42−0.61−0.15−0.48−0.68−0.19
FGFR3FKBP1A−0.54−0.72−0.30−0.41−0.61−0.18
ARHERAF1−0.51−0.68−0.30−0.50−0.65−0.34
BMIPDGFRA−0.66−0.87−0.42−0.38−0.60−0.15
  • * Pearson's Correlation Coefficient.