Article Figures & Data
Figures
- Fig. 1.
A mixture of two log-of-normal distributions.
Tables
- Table 1
Recognition accuracy (%)
K MMB Median Mean 1.5 83.74 78.41 78.17 1.8 87.53 84.54 83.65 2.0 89.53 87.54 85.94 2.5 96.89 96.82 95.05 - Table 2
Recognition accuracy (no. of errors) for two cancer data sets
MMB Mean Median Breast cancer data with normalization 0 1 1 Breast cancer data without normalization 0 1 3 SRBCT with normalization 0 0 1 SRBCT without normalization 0 4 3 - Table 3
Strongest genes selected from the quantized breast cancer data using the MMB method
No. CloneID Gene description 1 26184 Phosphofructokinase, platelet 2 44180 α-2-macroglobulin 3 309583 ESTs 4 30502 Reticulon 1 5 812227 Solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 6 376516 Cell division cycle 4-like 7 137638 ESTs 8 823940 Transducer of ERBB2, 1 (TOB1) 9 204897 Phospholipase C, γ 2 (phosphatidylinositol-specific) 10 839736 Crystallin, α B - Table 4
Strongest genes selected from the quantized breast cancer data using the Median method
No. CloneID Gene description 1 812227 Solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 2 35865 Annexin A6 3 204299 Replication protein A3 (14kD) 4 809981 Glutathione peroxidase 4 (phospholipid hydroperoxidase) 5 245198 KIAA0130 gene product 6 126412 Androgen receptor associated protein 54 7 48406 Hydroxysteroid (17-β) dehydrogenase 4 8 712848 Mitogen-activated protein-kinase activating death domain 9 814595 Protein kinase C binding protein 1 10 825577 Steroidogenic acute regulatory protein related - Table 5
Strongest genes selected from the quantized breast cancer data using the Mean method
No. CloneID Gene description 1 768370 Tissue inhibitor of metalloproteinase 3 2 290871 Integrin, α 3 (antigen CD49C, α 3 subunit of VLA-3 receptor) 3 83210 Complement component 8, β polypeptide 4 812227 Solute carrier family 9, isoform 1 5 204299 Replication protein A3 (14kD) 6 814595 Protein kinase C binding protein 1 7 825577 Steroidogenic acute regulatory protein related 8 126650 ESTs 9 139354 ESTs 10 809981 Glutathione peroxidase 4 (phospholipid hydroperoxidase) - Table 6
Strongest genes listed in [15]
No. CloneID Gene description 1 897781 Keratin 8 2 823940 Transducer of ERBB2, 1 (TOB1) 3 26184 Phosphofructokinase, platelet 4 840702 Selenophosphate synthetase; Human selenium donor protein 5 376516 Cell division cycle 4-like 6 47542 Small nuclear ribonucleoprotein D1 polypeptide (16kD) 7 366647 Butyrate response factor 1 (epidermal growth factor-response factor 1) 8 293104 Phytanoyl-CoA hydroxylase (Refsum disease) 9 28012 O-linked N-acetylglucosamine (GlcNAc) transferase 10 212198 Tumor protein p53-binding protein, 2 - Table 7
Strongest genes selected from the quantized blue-cell-tumor data using the MMB method
No. CloneID Gene description 1 325182 Cadherin 2, N-cadherin (neuronal) 2 36950 Phosphofructokinase, liver 3 1435862 Antigen identified by monoclonal antibodies 12E7, F21, and O13 4 786084 Chromobox homolog 1 (Drosophila HP1 β) 5 1434905 Homeo box B7 6 137535 Transcriptional intermediary factor 1 7 774502 Protein tyrosine phosphatase, nonreceptor type 12 8 486175 Solute carrier family 16 (monocarboxylic acid transporters), member 1 9 866702 Protein tyrosine phosphatase, nonreceptor type 13 10 166236 Glucose-6-phosphate dehydrogenase - Table 8
Strongest genes selected from the quantized blue-cell-tumor data using the Median method
No. CloneID Gene description 1 36950 Phosphofructokinase, liver 2 39796 3-Hydroxymethyl-3-methylglutaryl-Coenzyme A lyase 3 726236 Paired mesoderm homeo box 1 4 1434905 Homeo box B7 5 814260 Follicular lymphoma variant translocation 1 6 38471 Human cyclin G1 interacting protein (1500GX1) mRNA, complete cds 7 729964 Sphingomyelin phosphodiesterase 1, acid lysosomal 8 782193 Thioredoxin 9 207358 Solute carrier family 2 (facilitated glucose transporter), member 1 10 866702 Protein tyrosine phosphatase, nonreceptor type 13 - Table 9
Strongest genes selected from the quantized blue-cell-tumor data using the Mean method
No. CloneID Gene description 1 325182 Cadherin 2, N-cadherin (neuronal) 2 36950 Phosphofructokinase, liver 3 39796 3-Hydroxymethyl-3-methylglutaryl-Coenzyme A lyase 4 823598 Proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 5 770394 Fc fragment of IgG, receptor, transporter, alpha 6 1435862 Antigen identified by monoclonal antibodies 12E7, F21, and O13 7 295985 ESTs 8 377461 Caveolin 1, caveolae protein, 22kD 9 75254 Cysteine and glycine-rich protein 2 (LIM domain only, smooth muscle) 10 50359 Mannose phosphate isomerase
July 2003
Volume 2, Issue 7
Volume 2, Issue 7
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