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Research Articles: Therapeutics, Targets, and Development
Cell cycle phenotype-based optimization of G2-abrogating peptides yields CBP501 with a unique mechanism of action at the G2 checkpoint
1 CanBas Co. Ltd., Numazu, Japan; 2 Fazix Co., New York, New York; 3 MDS Pharma Services, Taipei, Taiwan; 4 School of Pharmaceutical Sciences, University of Shizuoka, Shizuoka, Japan; 5 Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts; and 6 Arizona Cancer Center, University of Arizona, Tucson, Arizona
Requests for reprints: Takumi Kawabe, CanBas Co. Ltd., Makiya Building 5F, 9 Tooriyoko-cho, Numazu 410-0891, Japan. Phone: 81-55-954-3666; Fax: 81-55-954-3668. E-mail: takumi{at}canbas.co.jp
Abstract
Cell cycle G2 checkpoint abrogation is an attractive strategy for sensitizing cancer cells to DNA-damaging anticancer agent without increasing adverse effects on normal cells. However, there is no single proven molecular target for this therapeutic approach. High-throughput screening for molecules inhibiting CHK1, a kinase that is essential for the G2 checkpoint, has not yet yielded therapeutic G2 checkpoint inhibitors, and the tumor suppressor phenotypes of ATM and CHK2 suggest they may not be ideal targets. Here, we optimized two G2 checkpoint-abrogating peptides, TAT-S216 and TAT-S216A, based on their ability to reduce G2 phase accumulation of DNA-damaged cells without affecting M phase accumulation of cells treated with a microtubule-disrupting compound. This approach yielded a peptide CBP501, which has a unique, focused activity against molecules that phosphorylate Ser216 of CDC25C, including MAPKAP-K2, C-Tak1, and CHK1. CBP501 is >100-fold more potent than TAT-S216A and retains its selectivity for cancer cells. CBP501 is unusually stable, enters cells rapidly, and increases the cytotoxicity of DNA-damaging anticancer drugs against cancer cells without increasing adverse effects. These findings highlight the potency of CBP501 as a G2-abrogating drug candidate. This report also shows the usefulness of the cell cycle phenotype-based protocol for identifying G2 checkpoint-abrogating compounds as well as the potential of peptide-based compounds as focused multitarget inhibitors. [Mol Cancer Ther 2007;6(1):14753]
Introduction
There are numerous ways for normal cells to be transformed into cancer cells. The common feature of most cancer cells is that they exhibit genomic instability (1). Most cancer cells exhibit impaired regulation at their cell cycle G1 checkpoint. Abnormalities in classic oncogenes and in tumor suppressors, such as ras, c-myc, p53, and Rb, all impair G1 checkpoint regulation (2). The unique dependency of most cancer cells on G2 checkpoint to survive with DNA damage makes "G2 checkpoint abrogation" an attractive strategy to selectively kill cancer cells (3). Because there are multiple G2 checkpoint machineries in cells and some of them are defective in tumor cells, it would be ideal to disrupt only certain G2 checkpoint machineries on which cancer cells are dependent to selectively kill cancer cells (4).
Some of the mechanisms of the cell cycle G2 checkpoint are conserved between yeast and humans (5). Damage to DNA sequentially activates ATM/ATR or p38 and then CHK1, CHK2, and/or MAPKAP-K2 (6). This activation leads to phosphorylation of CDC25 at various sites, including Ser216 of human CDC25C (7), which keeps CDC25 sequestered in the cytosol (8) by inducing the binding of 14-3-3 to this site and/or directly reduces its phosphatase activity (9). Curiously, a MARK family kinase, C-Tak1/KP78, can also phosphorylate Ser216 of CDC25C (10, 11). Phosphorylation of CDC25 prevents it from activating CDC2/cyclin B, the master control switch of the transition from G2 to M phase (12, 13). There are many other molecules in the G2 checkpoint signal cascade to be considered, such as CDC25B (14), Polo-like kinases (15), Claspin (16), TopBP1 (17), BRCA1 (18), p21 (19), GADD45 (20), c-Abl (21, 22), WEE1 (23), and proliferating cell nuclear antigen (24); still more may be identified in the future. Some of these molecules are involved in independent G2 checkpoint signal cascades, and each tumor cell is likely to depend on different sets of G2 checkpoint signal cascades.
Nonetheless, the critical roles of CDC25C and other factors that interact with Ser216 are suggested in work of Peng et al. (7), which examined G2 checkpoint control in a cell line containing a site-directed mutant of CDC25C in which Ala replaces the Ser216 residue. We applied this result to the design of short peptides, TAT-S216 and TAT-S216A (25), to competitively inhibit the activity of the protein kinases CHK1 and CHK2 in vitro. The successful inhibition of G2 checkpoint control and the selectively enhanced sensitivity of cancer cells to DNA-damaging agents led us to further optimize the peptides using a phenotype-based (cell cycle distribution pattern) screening method. This approach led to the identification of the peptide CBP501, which inhibits the activity of multiple Ser216-specific kinases, such as MAPKAP-K2, C-Tak1, and CHK1, and also shows cancer cellselective enhancement of the cytotoxicity of DNA-damaging anticancer medicine. Here, we report that CBP501 is a novel anticancer drug candidate with G2 checkpoint-abrogating activity.
Materials and Methods
Cell Culture and Reagents
Cells were cultured in various media supplemented with 10% FCS (Equitech-Bio, Kerrville, TX) at 37°C with 5% CO2/air. The media used were RPMI 1640 (Sigma-Aldrich, St. Louis, MO) for Jurkat cells, McCoy's 5A (Invitrogen, Carlsbad, CA) for HCT116 cells, RPMI 1640 supplemented with 0.1% phytohemagglutinin (Sigma-Aldrich) and 1 unit/mL interleukin-2 (Hemagen Diagnostics, Inc., Columbia, MD) for normal T cells, and DMEM (Dainihonseiyaku Co., Osaka, Japan) with 2.5% horse serum (Invitrogen) for MIAPaCa2 cells. CBP501 was manufactured by Peptide Institute, Inc. (Osaka, Japan) and UCB-Bioproducts (Braine-L'Alleud, Belgium). TAT-S216A and CBP004 were manufactured by Sigma-Aldrich. Cisplatin (CDDP), colchicine, and bleomycin were purchased from Nihonkayaku (Tokyo, Japan), Sigma-Aldrich, and Wako Pure Chemicals (Osaka, Japan), respectively.
Cell Cycle Analysis
For cell cycle analysis, cells were stained with Krishan's buffer (0.1% sodium citrate, 50 µg/mL propidium iodide, 20 µg/mL RNase A, 0.5% NP40) followed by flow cytometry (Becton Dickinson, Franklin Lakes, NJ).
Phosphorylation Inhibition Analysis
Phosphorylation inhibition analyses were done by CycLex Co. Ltd. (Nagano, Japan). Sources of enzymes (full-length human recombinant proteins), measurement methods, and reaction buffers are as follows (all incubations were done at 30°C): AKT1 and AKT2: SF-9 cells, ELISA, 1x Mg/Mn kinase buffer [20 mmol/L HEPES-KOH (pH 7.5), 1 mmol/L DTT, 80 µg/mL bovine serum albumin, 10 mmol/L MgCl2, 10 mmol/L MnCl2]; CHK1, CHK2, and C-Tak1: SF-9 cells for CHK1 and C-Tak1 and Escherichia coli for CHK2, ELISA, 1x Mg kinase buffer [20 mmol/L HEPES-KOH (pH 7.5), 1 mmol/L DTT, 80 µg/mL bovine serum albumin, 10 mmol/L MgCl2]; Polo-like kinase-1 and MAPKAP-K2: glutathione S-transferase fusion from E. coli, ELISA, and 1x Mg kinase buffer; protein kinase A: E. coli (catalytic subunit), ELISA, and 1x protein kinase A reaction buffer [20 mmol/L Tris-HCl (pH 7.0), 3 mmol/L MgCl2]; p38: E. coli, RIA, and 1x Mg kinase buffer; TrkA: SF-9 (catalytic subunit), ELISA, and 1x Mg buffer; c-Abl: SF-9 (catalytic subunit), ELISA, and 1x Mg/Mn kinase buffer; and protein kinase C: rat brain, ELISA, and 1x protein kinase C reaction buffer [20 mmol/L Tris-HCl (pH 7.0), 3 mmol/L MgCl2, 2 mmol/L CaCl2, 50 µg/mL phosphatidylserine].
Computer-Assisted Docking Model Analysis
Potential binding sites for CBP501 were identified in the three-dimensional structures of G2 checkpoint proteins of known structure of CHK1 (26) using SHOSITES (Fazix Co., New York, NY) as described previously (27). A molecular model of CBP501 was generated with Quanta software (Accelrys, Inc., San Diego, CA), and this model peptide was fit into SHOSITES pseudodensity using O software (Uppsala Software Factory, Uppsala, Sweden; ref. 28). The initial fit into this site was refined by converting the SHOSITES pseudodensity to crystallographic Fourier structure factors and doing standard crystallographic refinement (CNX, Accelrys), treating both the real and imaginary parts of these complex-valued structure factors as "experimental" restraints.
Detection of Phosphoproteins
Jurkat cells were treated with or without bleomycin plus or minus CBP501 at the indicated concentrations for the indicated times. The cells were lysed in buffer A [100 mmol/L NaCl, 10 mmol/L Tris-HCl (pH 8.0), 1 mmol/L DTT, 0.2% NP40, 10 mmol/L NaF, 10 mmol/L Na3VO4, 500 nmol/L okadaic acid, proteinase inhibitors], and 50 µg of lysate were run on 10% SDS-PAGE gel and analyzed by Western blot using the following antibodies: anti-phosphorylated Ser216 of CDC25C (Cell Signaling Technology, Beverly, MA), anti-CDC25C (Santa Cruz Biotechnology, Santa Cruz, CA), anti-phosphorylated Tyr15 of CDC2 (Cell Signaling Technology), anti-phosphorylated Ser10 of histone H3 (Upstate Biotechnology, Uppsala, Sweden), anti-phosphorylated Ser345 of CHK1 (Cell Signaling Technology), or anti-phosphorylated Thr68 of CHK2 (Cell Signaling Technology) antibodies.
Colony Formation Analysis
The cells were seeded at 300 per six-well plate in a triplicate manner, treated with compounds, and cultured for 7 to 8 days. The colonies were fixed and stained with crystal violet (Sigma-Aldrich).
Xenograft Model
Six-week-old male severe combined immunodeficient mice (Charles River Laboratories, Wilmington, MA) were injected s.c. in the flank with a suspension of HCT116 or NCI-H460. Tumor size was measured thrice weekly using a pair of calipers. The volumes were calculated using the following formula: volume (cm3) = [width2 (mm) x length (mm)] / 2,000. The relative tumor volume was expressed as the Vt/V0 index, where Vt is the tumor volume on a given day and V0 is the volume of the same tumor just before first treatment (i.e., initial tumor volume). Mean relative tumor sizes ± SE were plotted. Body weight was measured thrice weekly starting at the first treatment. The percentage maximal weight loss compared with the weight just before the initial treatment was measured. For the survival analysis, 8-week-old male severe combined immunodeficient mice were transplanted i.p. with 8.5 x 106 cells per animal of HCT116 cells (n = 10). Animals were housed in accordance with guidelines from the Association for the Assessment and Accreditation of Laboratory Animal Care International, and the protocols were approved by institutional animal care committee of CanBas Co. Ltd.
Statistical Analysis
The statistical significance of the differences between groups was determined by Student's t tests. Survival tests were analyzed by the Kaplan-Meier method and compared using the log-rank test.
Results and Discussion
Generation of CBP501
The proposed mechanism of action of G2 checkpoint-abrogating peptides TAT-S216 and TAT-S216A is depicted in Fig. 1A
. The sequence of amino acid residues 211 to 221 of CDC25C was connected to the 11 amino acids of the HIV-TAT transduction sequence so that the 211 to 221 portion could competitively inhibit CHK1/CHK2 in live cells.
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2,000 modified peptides, those peptides phosphorylated most efficiently in vitro by CHK1 were selected (data not shown). The second step was the phenotype-based optimization. The compounds that met the following four criteria with highest activity and selectivity were chosen: (a) alone, the compound does not change the cell cycle distribution of Jurkat cells, a human T-cell lymphoma cell line, or the distribution of phytohemagglutinin- and interleukin-2-activated human primary normal T cells (T cells), which are dividing as rapidly as Jurkat cells; (b) it does not change the cell cycle distribution of T cells that are simultaneously treated with candidate peptides plus the DNA-damaging agent bleomycin or the microtubule-disrupting agent colchicine; (c) it does not disturb the M phase accumulation of Jurkat cells when cells are simultaneously treated with peptide plus colchicine; and (d) it decreases the accumulation of G2 phase Jurkat cells in response to simultaneous treatment with bleomycin. A typical cell cycle pattern is shown in Fig. 1B. The dose-response curve for each variable was also analyzed in actual screening. Following multiple rounds of amino acid substitution, the phenotype-based analysis and the structure-activity relationship analyses resulted in the identification of CBP501, a synthetic peptide with 12 d-type amino acid residues (Fig. 1C). The ED50 of CBP501 in reducing the G2 population of bleomycin-treated Jurkat cells was 0.1 µmol/L whereas that of TAT-S216A was 100 µmol/L. Up to 12.5 µmol/L CBP501, by itself or in the presence of colchicine, did not change the cell cycle distribution of Jurkat cells (data not shown). Despite the original conception of the mechanism of action of TAT-S216 and TAT-S216A, in vitro kinase inhibition analysis of the three peptides (including an intermediately optimized peptide, CBP004) indicated that the inhibition of CHK1 and CHK2 by these peptides did not directly correlate with the ED50 values (Fig. 1C).
Mechanism of Action of CBP501
A panel analysis of the inhibition of various kinases by CBP501 showed selectivity of CBP501 inhibition for the kinases that phosphorylate Ser216 of CDC25C, such as MAPKAP-K2, C-Tak1, and CHK1 (Fig. 2A
). MAPKAP-K2 was not known to be involved in G2 checkpoint at the time of the optimization. Its identification illustrates an advantage of the phenotype-based screening protocol, which allows detection of inhibitors of unknown target molecules.
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We have not explored the possibility of S phase checkpoint abrogation by CBP501 in this study. Because a known inhibitor of CHK1, UCN-01, can abrogate both S and G2 checkpoints and S checkpoint abrogation but not G2 checkpoint abrogation was shown to be the reason of enhanced clonogenic inhibition by UCN-01 on top of CPT-11 and S phase checkpoint inhibition by UCN-01 increased checkpoint response (29), which is similar to what we observed here as the increased phosphorylation of CHK2 by CBP501 treatment (Fig. 2D), further study is warranted to explore the possibility of S phase checkpoint inhibition by CBP501.
CBP501 Enhances Cytotoxicity of CDDP and Bleomycin against Cancer Cells In vitro
Treatment of cancer-derived cell lines, such as HCT116, a human colon cancer cell line, and MIAPaCa2, a human pancreatic cancer cell line, with bleomycin or CDDP induces G2 arrest. CBP501 by itself did not affect cell cycle distribution of these cells up to 25 µmol/L (data not shown). Simultaneous treatment of these cells with CBP501 and bleomycin or CDDP decreased the accumulation of cells at G2 phase, which did not occur in (normal) human umbilical vascular endothelial cell. Representative cell cycle distributions of MIAPaCa2 and human umbilical vascular endothelial cells treated with CDDP plus or minus CBP501 are shown in Fig. 3A
. Figure 3B shows photomicrographs of MIAMaCa2 cells treated with CBP501, CDDP, or both and also control cells (no addition). The combined treatment with CBP501 and CDDP induced massive cell death. Colony formation analysis confirmed that CBP501 plus bleomycin or CDDP resulted in enhanced growth inhibition and/or killing of HCT116 and MIAPaCa2 cells (Fig. 3C and D).
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Acknowledgments
We thank W.G. Dunphy for advice and scientific discussion, Drs. K. Nakajima and K. Kumagai for help in designing peptides, Dr. Y. Mizoguchi for help with histologic analysis, and Dr. B. Trenchak for editorial help.
Footnotes
Grant support: Japanese Ministry of Economy, Trade, and Industry; Shizuoka Organization for Creation of Industries; Toyota Motor Co. Ltd.; and Olympus Co. Ltd.
The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
Received 6/26/06; revised 11/ 6/06; accepted 11/16/06.
References
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